Detailed information of SNP:
|
SNP ID:
sf0916776399(Gbrowse)
Chromosome: chr09 Position: 16776399 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.19% | 35.81% |
| All Indica | 796 | 38.07% | 61.93% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 52.80% | 47.20% |
| Indica II | 213 | 13.62% | 86.38% |
| Indica Intermediate | 208 | 36.54% | 63.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916776399 | G->A | INTERGENIC | None |