Detailed information of SNP:
|
SNP ID:
sf0916794851(Gbrowse)
Chromosome: chr09 Position: 16794851 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 85.90% | 14.10% |
| All Indica | 743 | 74.43% | 25.57% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 339 | 62.54% | 37.46% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 193 | 71.50% | 28.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916794851 | C->T | LOC_Os09g27630(LOC_Os09g27630.1) | SNPs that disrupt initiation codons |