Detailed information of SNP:
|
SNP ID:
sf0916819320(Gbrowse)
Chromosome: chr09 Position: 16819320 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 86.66% | 13.34% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 496 | 76.21% | 23.79% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 91.02% | 8.98% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916819320 | C->T | INTERGENIC | None |