Detailed information of SNP:
|
SNP ID:
sf0916857915(Gbrowse)
Chromosome: chr09 Position: 16857915 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 60.38% | 39.62% |
| All Indica | 794 | 39.80% | 60.20% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 54.84% | 45.16% |
| Indica II | 213 | 12.68% | 87.32% |
| Indica Intermediate | 209 | 40.67% | 59.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916857915 | G->T | LOC_Os09g27700(LOC_Os09g27700.2) | INTRON |
| sf0916857915 | G->T | LOC_Os09g27700(LOC_Os09g27700.1) | INTRON |