Detailed information of SNP:
|
SNP ID:
sf0916881609(Gbrowse)
Chromosome: chr09 Position: 16881609 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.64% | 44.36% |
| All Indica | 799 | 38.42% | 61.58% |
| All Japonica | 497 | 78.47% | 21.53% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 54.40% | 45.60% |
| Indica II | 213 | 9.86% | 90.14% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916881609 | C->T | INTERGENIC | None |