Detailed information of SNP:
|
SNP ID:
sf0916887276(Gbrowse)
Chromosome: chr09 Position: 16887276 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.08% | 44.92% |
| All Indica | 798 | 37.72% | 62.28% |
| All Japonica | 497 | 78.27% | 21.73% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 53.33% | 46.67% |
| Indica II | 213 | 9.39% | 90.61% |
| Indica Intermediate | 210 | 38.57% | 61.43% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916887276 | G->A | INTERGENIC | None |