Detailed information of SNP:
|
SNP ID:
sf0916891003(Gbrowse)
Chromosome: chr09 Position: 16891003 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 96.77% | 3.23% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 444 | 90.54% | 9.46% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 99.68% | 0.32% |
| Tropical Japonica | 60 | 40.00% | 60.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916891003 | C->T | LOC_Os09g27760(LOC_Os09g27760.1) | Non-Synonymous SNP |