Detailed information of SNP:
|
SNP ID:
sf0916973524(Gbrowse)
Chromosome: chr09 Position: 16973524 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 65.09% | 34.91% |
| All Indica | 796 | 39.70% | 60.30% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 54.28% | 45.72% |
| Indica II | 213 | 13.62% | 86.38% |
| Indica Intermediate | 209 | 40.19% | 59.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0916973524 | A->G | LOC_Os09g27930(LOC_Os09g27930.1) | INTRON |