Detailed information of SNP:
|
SNP ID:
sf0917041785(Gbrowse)
Chromosome: chr09 Position: 17041785 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 96.10% | 3.90% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 492 | 89.84% | 10.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 89 | 65.17% | 34.83% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917041785 | G->A | INTERGENIC | None |