Detailed information of SNP:
SNP ID:
sf0917058578(Gbrowse)
Chromosome: chr09 Position: 17058578 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1418 | 62.20% | 37.80% |
All Indica | 799 | 98.87% | 1.13% |
All Japonica | 497 | 0.60% | 99.40% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 96.71% | 3.29% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 0.00% | 100.00% |
Tropical Japonica | 94 | 2.13% | 97.87% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0917058578 | G->A | INTERGENIC | None |