Detailed information of SNP:
|
SNP ID:
sf0917091122(Gbrowse)
Chromosome: chr09 Position: 17091122 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 58.50% | 41.50% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 38 | 10.53% | 89.47% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 36 | 52.78% | 47.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917091122 | T->C | LOC_Os09g28180(LOC_Os09g28180.1) | UTR_3_PRIME |