Detailed information of SNP:
|
SNP ID:
sf0917111967(Gbrowse)
Chromosome: chr09 Position: 17111967 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1305 | 92.64% | 7.36% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 388 | 77.32% | 22.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 240 | 68.33% | 31.67% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 56 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917111967 | C->T | INTERGENIC | None |