Detailed information of SNP:
|
SNP ID:
sf0917114950(Gbrowse)
Chromosome: chr09 Position: 17114950 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 80.69% | 19.31% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 47.69% | 52.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 31.64% | 68.36% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917114950 | A->G | INTERGENIC | None |