Detailed information of SNP:
|
SNP ID:
sf0917190899(Gbrowse)
Chromosome: chr09 Position: 17190899 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 74.96% | 25.04% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 494 | 49.39% | 50.61% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 332 | 65.06% | 34.94% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917190899 | T->A | LOC_Os09g28310(LOC_Os09g28310.1) | INTRON |