Detailed information of SNP:
|
SNP ID:
sf0917228616(Gbrowse)
Chromosome: chr09 Position: 17228616 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 58.12% | 41.88% |
| All Indica | 777 | 94.34% | 5.66% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 364 | 92.86% | 7.14% |
| Indica II | 209 | 94.74% | 5.26% |
| Indica Intermediate | 204 | 96.57% | 3.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917228616 | A->C | INTERGENIC | None |