Detailed information of SNP:
|
SNP ID:
sf0917264312(Gbrowse)
Chromosome: chr09 Position: 17264312 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 95.69% | 4.31% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 63 | 20.63% | 79.37% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917264312 | C->T | INTERGENIC | None |