Detailed information of SNP:
|
SNP ID:
sf0917279217(Gbrowse)
Chromosome: chr09 Position: 17279217 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 59.11% | 40.89% |
| All Indica | 796 | 98.12% | 1.88% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 9 | 22.22% | 77.78% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917279217 | T->C | INTERGENIC | None |