Detailed information of SNP:
|
SNP ID:
sf0917287115(Gbrowse)
Chromosome: chr09 Position: 17287115 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 67.86% | 32.14% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 446 | 12.11% | 87.89% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 297 | 16.84% | 83.16% |
| Tropical Japonica | 86 | 1.16% | 98.84% |
| Japonica Intermediate | 63 | 4.76% | 95.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 37 | 45.95% | 54.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917287115 | A->G | INTERGENIC | None |