Detailed information of SNP:
|
SNP ID:
sf0917356321(Gbrowse)
Chromosome: chr09 Position: 17356321 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 74.34% | 25.66% |
| All Indica | 785 | 55.29% | 44.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 56.52% | 43.48% |
| Indica II | 210 | 54.76% | 45.24% |
| Indica Intermediate | 207 | 53.62% | 46.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917356321 | T->A | LOC_Os09g28540(LOC_Os09g28540.1) | Non-Synonymous SNP |