Detailed information of SNP:
|
SNP ID:
sf0917463009(Gbrowse)
Chromosome: chr09 Position: 17463009 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 60.64% | 39.36% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917463009 | C->A | INTERGENIC | None |