Detailed information of SNP:
SNP ID:
sf0917468027(Gbrowse)
Chromosome: chr09 Position: 17468027 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 61.64% | 38.36% |
All Indica | 799 | 98.87% | 1.13% |
All Japonica | 497 | 0.40% | 99.60% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 95.77% | 4.23% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 0.00% | 100.00% |
Tropical Japonica | 94 | 0.00% | 100.00% |
Japonica Intermediate | 68 | 2.94% | 97.06% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0917468027 | T->C | LOC_Os09g28740(LOC_Os09g28740.1) | UTR_3_PRIME |