Detailed information of SNP:



SNP ID: sf0917468027(Gbrowse)

Chromosome: chr09

Position: 17468027
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 61.64% 38.36%
All Indica799 98.87% 1.13%
All Japonica497 0.40% 99.60%
Aus67 98.51% 1.49%
Indica I375 100.00% 0.00%
Indica II213 95.77% 4.23%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 0.00% 100.00%
Tropical Japonica94 0.00% 100.00%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 7.14% 92.86%
Intermediate41 36.59% 63.41%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0917468027 T->C LOC_Os09g28740(LOC_Os09g28740.1) UTR_3_PRIME