Detailed information of SNP:
|
SNP ID:
sf0917476264(Gbrowse)
Chromosome: chr09 Position: 17476264 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1381 | 96.89% | 3.11% |
| All Indica | 766 | 96.48% | 3.52% |
| All Japonica | 493 | 96.75% | 3.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 95.52% | 4.48% |
| Indica II | 203 | 96.55% | 3.45% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 332 | 96.39% | 3.61% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917476264 | A->C | LOC_Os09g28770(LOC_Os09g28770.1) | INTRON |