Detailed information of SNP:
|
SNP ID:
sf0917484209(Gbrowse)
Chromosome: chr09 Position: 17484209 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 70.89% | 29.11% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 492 | 22.76% | 77.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 331 | 30.51% | 69.49% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917484209 | T->C | INTERGENIC | None |