Detailed information of SNP:
|
SNP ID:
sf0917542856(Gbrowse)
Chromosome: chr09 Position: 17542856 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1299 | 97.77% | 2.23% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 379 | 93.67% | 6.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 244 | 90.57% | 9.43% |
| Tropical Japonica | 79 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 98.21% | 1.79% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917542856 | G->T | INTERGENIC | None |