Detailed information of SNP:
|
SNP ID:
sf0917566302(Gbrowse)
Chromosome: chr09 Position: 17566302 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.59% | 42.41% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917566302 | G->A | INTERGENIC | None |