Detailed information of SNP:
|
SNP ID:
sf0917593973(Gbrowse)
Chromosome: chr09 Position: 17593973 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1244 | 91.88% | 8.12% |
| All Indica | 629 | 84.42% | 15.58% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 301 | 87.04% | 12.96% |
| Indica II | 164 | 84.76% | 15.24% |
| Indica Intermediate | 164 | 79.27% | 20.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917593973 | G->T | INTERGENIC | None |