Detailed information of SNP:
|
SNP ID:
sf0917594738(Gbrowse)
Chromosome: chr09 Position: 17594738 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1323 | 93.20% | 6.80% |
| All Indica | 703 | 87.62% | 12.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 307 | 79.80% | 20.20% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 187 | 88.77% | 11.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917594738 | C->T | INTERGENIC | None |