Detailed information of SNP:
|
SNP ID:
sf0917630771(Gbrowse)
Chromosome: chr09 Position: 17630771 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 51.66% | 48.34% |
| All Indica | 795 | 90.31% | 9.69% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 91.42% | 8.58% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917630771 | A->T | INTERGENIC | None |