Detailed information of SNP:
|
SNP ID:
sf0917634520(Gbrowse)
Chromosome: chr09 Position: 17634520 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 89.35% | 10.65% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 488 | 73.57% | 26.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 88.32% | 11.68% |
| Tropical Japonica | 87 | 14.94% | 85.06% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917634520 | T->A | INTERGENIC | None |