Detailed information of SNP:
|
SNP ID:
sf0917684024(Gbrowse)
Chromosome: chr09 Position: 17684024 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 61.60% | 38.40% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917684024 | T->C | LOC_Os09g29110(LOC_Os09g29110.1) | Non-Synonymous SNP |