Detailed information of SNP:
|
SNP ID:
sf0917715815(Gbrowse)
Chromosome: chr09 Position: 17715815 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 80.99% | 19.01% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 480 | 48.75% | 51.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 53.11% | 46.89% |
| Tropical Japonica | 91 | 16.48% | 83.52% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917715815 | C->T | INTERGENIC | None |