Detailed information of SNP:
|
SNP ID:
sf0917745483(Gbrowse)
Chromosome: chr09 Position: 17745483 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.02% | 37.98% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917745483 | T->C | LOC_Os09g29190(LOC_Os09g29190.1) | UTR_3_PRIME |
| sf0917745483 | T->C | LOC_Os09g29190(LOC_Os09g29190.2) | UTR_3_PRIME |