Detailed information of SNP:
|
SNP ID:
sf0917771043(Gbrowse)
Chromosome: chr09 Position: 17771043 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 71.66% | 28.34% |
| All Indica | 797 | 97.99% | 2.01% |
| All Japonica | 497 | 41.05% | 58.95% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 50.45% | 49.55% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917771043 | G->A | INTERGENIC | None |