Detailed information of SNP:
|
SNP ID:
sf0917807339(Gbrowse)
Chromosome: chr09 Position: 17807339 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 59.39% | 40.61% |
| All Indica | 794 | 95.59% | 4.41% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917807339 | G->A | LOC_Os09g29340(LOC_Os09g29340.1) | INTRON |