Detailed information of SNP:
|
SNP ID:
sf0917837618(Gbrowse)
Chromosome: chr09 Position: 17837618 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 78.62% | 21.38% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 497 | 54.93% | 45.07% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 67.16% | 32.84% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917837618 | C->T | INTERGENIC | None |