Detailed information of SNP:
|
SNP ID:
sf0917909483(Gbrowse)
Chromosome: chr09 Position: 17909483 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 55.50% | 44.50% |
| All Indica | 797 | 95.73% | 4.27% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 60 | 6.67% | 93.33% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917909483 | G->T | INTERGENIC | None |