Detailed information of SNP:
|
SNP ID:
sf0917917787(Gbrowse)
Chromosome: chr09 Position: 17917787 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 59.93% | 40.07% |
| All Indica | 780 | 98.97% | 1.03% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 17 | 82.35% | 17.65% |
| Indica I | 365 | 100.00% | 0.00% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 5 | 20.00% | 80.00% |
| Intermediate | 37 | 32.43% | 67.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917917787 | A->T | LOC_Os09g29470(LOC_Os09g29470.2) | UTR_5_PRIME |
| sf0917917787 | A->T | LOC_Os09g29470(LOC_Os09g29470.3) | UTR_5_PRIME |
| sf0917917787 | A->T | LOC_Os09g29470(LOC_Os09g29470.1) | UTR_5_PRIME |