Detailed information of SNP:
|
SNP ID:
sf0917925618(Gbrowse)
Chromosome: chr09 Position: 17925618 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 82.56% | 17.44% |
| All Indica | 722 | 77.56% | 22.44% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 320 | 64.06% | 35.94% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 192 | 81.25% | 18.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917925618 | C->T | INTERGENIC | None |