Detailed information of SNP:
|
SNP ID:
sf0917926606(Gbrowse)
Chromosome: chr09 Position: 17926606 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 61.74% | 38.26% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 484 | 3.51% | 96.49% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 326 | 3.37% | 96.63% |
| Tropical Japonica | 90 | 2.22% | 97.78% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917926606 | A->G | INTERGENIC | None |