Detailed information of SNP:
|
SNP ID:
sf0917926668(Gbrowse)
Chromosome: chr09 Position: 17926668 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.82% | 44.18% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917926668 | G->A | INTERGENIC | None |