Detailed information of SNP:



SNP ID: sf0917939761(Gbrowse)

Chromosome: chr09

Position: 17939761
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 62.79% 37.21%
All Indica799 99.00% 1.00%
All Japonica497 0.60% 99.40%
Aus67 97.01% 2.99%
Indica I375 100.00% 0.00%
Indica II213 96.71% 3.29%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 0.30% 99.70%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate68 0.00% 100.00%
Group VI/Aromatic14 71.43% 28.57%
Intermediate42 52.38% 47.62%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0917939761 A->G INTERGENIC None