Detailed information of SNP:
|
SNP ID:
sf0917981726(Gbrowse)
Chromosome: chr09 Position: 17981726 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.01% | 44.99% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0917981726 | C->T | LOC_Os09g29570(LOC_Os09g29570.1) | Non-Synonymous SNP |