Detailed information of SNP:
SNP ID:
sf0917982990(Gbrowse)
Chromosome: chr09 Position: 17982990 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 62.55% | 37.45% |
All Indica | 799 | 98.62% | 1.38% |
All Japonica | 497 | 0.60% | 99.40% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 213 | 96.71% | 3.29% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 0.60% | 99.40% |
Tropical Japonica | 94 | 1.06% | 98.94% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 71.43% | 28.57% |
Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0917982990 | A->G | LOC_Os09g29570(LOC_Os09g29570.1) | INTRON |