Detailed information of SNP:
|
SNP ID:
sf0918000005(Gbrowse)
Chromosome: chr09 Position: 18000005 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1328 | 59.49% | 40.51% |
| All Indica | 777 | 98.20% | 1.80% |
| All Japonica | 495 | 0.00% | 100.00% |
| Aus | 17 | 82.35% | 17.65% |
| Indica I | 363 | 98.07% | 1.93% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 204 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 4 | 0.00% | 100.00% |
| Intermediate | 35 | 37.14% | 62.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918000005 | A->G | INTERGENIC | None |