Detailed information of SNP:
|
SNP ID:
sf0918021011(Gbrowse)
Chromosome: chr09 Position: 18021011 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 72.64% | 27.36% |
| All Indica | 797 | 97.87% | 2.13% |
| All Japonica | 468 | 26.71% | 73.29% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 318 | 32.39% | 67.61% |
| Tropical Japonica | 89 | 4.49% | 95.51% |
| Japonica Intermediate | 61 | 29.51% | 70.49% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918021011 | T->C | INTERGENIC | None |