Detailed information of SNP:
|
SNP ID:
sf0918027309(Gbrowse)
Chromosome: chr09 Position: 18027309 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 66.29% | 33.71% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918027309 | G->T | INTERGENIC | None |