Detailed information of SNP:
|
SNP ID:
sf0918029518(Gbrowse)
Chromosome: chr09 Position: 18029518 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1283 | 88.00% | 12.00% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 370 | 63.51% | 36.49% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 258 | 56.59% | 43.41% |
| Tropical Japonica | 68 | 91.18% | 8.82% |
| Japonica Intermediate | 44 | 61.36% | 38.64% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 36 | 80.56% | 19.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918029518 | T->C | INTERGENIC | None |