Detailed information of SNP:
|
SNP ID:
sf0918032762(Gbrowse)
Chromosome: chr09 Position: 18032762 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1330 | 63.68% | 36.32% |
| All Indica | 778 | 97.04% | 2.96% |
| All Japonica | 495 | 12.53% | 87.47% |
| Aus | 18 | 83.33% | 16.67% |
| Indica I | 363 | 98.35% | 1.65% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 334 | 18.56% | 81.44% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 5 | 0.00% | 100.00% |
| Intermediate | 34 | 44.12% | 55.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918032762 | C->T | INTERGENIC | None |