Detailed information of SNP:
|
SNP ID:
sf0918055145(Gbrowse)
Chromosome: chr09 Position: 18055145 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 88.29% | 11.71% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 86.92% | 13.08% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 80.90% | 19.10% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918055145 | A->G | INTERGENIC | None |