Detailed information of SNP:
|
SNP ID:
sf0918066090(Gbrowse)
Chromosome: chr09 Position: 18066090 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 66.48% | 33.52% |
| All Indica | 797 | 94.60% | 5.40% |
| All Japonica | 497 | 17.91% | 82.09% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 25.97% | 74.03% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918066090 | T->G | INTERGENIC | None |